STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0513PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0879 binding-protein-dependent transport systems inner membrane component. (272 aa)    
Predicted Functional Partners:
Cpap_0514
KEGG: cce:Ccel_0880 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.985
Cpap_0512
KEGG: cce:Ccel_0878 hypothetical protein.
 
 
 0.973
Cpap_1028
KEGG: cce:Ccel_0437 extracellular solute-binding protein family 3.
 
 
 0.886
Cpap_1026
KEGG: cce:Ccel_0435 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.875
Cpap_0784
KEGG: hor:Hore_14760 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.858
Cpap_0779
KEGG: mta:Moth_0097 NlpA lipoprotein.
 
 
 0.793
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 
 0.579
Cpap_4108
KEGG: cce:Ccel_2329 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NLI interacting domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.571
Cpap_1703
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.509
Cpap_3912
KEGG: cce:Ccel_1144 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; DsrE family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.508
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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