STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0518PFAM: Peptidase M23; KEGG: cce:Ccel_0884 peptidase M23. (342 aa)    
Predicted Functional Partners:
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
   
   0.778
Cpap_0517
PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_0883 polysaccharide deacetylase.
 
     0.713
Cpap_0516
KEGG: cce:Ccel_0882 hypothetical protein.
 
     0.574
Cpap_3875
KEGG: cce:Ccel_1111 glycoside hydrolase family 18; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding lysin domain; SMART: chitinase II; Peptidoglycan-binding LysM.
  
     0.515
Cpap_3951
KEGG: cce:Ccel_1181 hypothetical protein.
  
     0.483
Cpap_0519
KEGG: cce:Ccel_0885 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
       0.465
Cpap_0760
KEGG: cce:Ccel_2462 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
  
  
 0.420
Cpap_0507
KEGG: aoe:Clos_2754 hypothetical protein.
  
     0.408
Cpap_2211
KEGG: cce:Ccel_0132 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein.
    
 0.406
Cpap_2489
Protein of unknown function DUF204; Probably functions as a manganese efflux pump.
  
     0.401
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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