STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0531KEGG: bld:BLi03370 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 0.975
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 0.939
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
  
 0.939
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 0.939
Cpap_4108
KEGG: cce:Ccel_2329 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NLI interacting domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.880
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
  
 0.876
Cpap_4137
KEGG: cce:Ccel_2303 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; iron hydrogenase small subunit; ferredoxin.
    
 0.830
Cpap_0775
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: cce:Ccel_2448 FAD dependent oxidoreductase.
  
   0.803
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
  
 0.724
Cpap_2389
KEGG: cce:Ccel_3366 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
   0.695
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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