STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0543PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bmd:BMD_0297 subtilisin like serine protease. (596 aa)    
Predicted Functional Partners:
Cpap_0544
TIGRFAM: YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; YD repeat-containing protein; Kelch repeat type 1-containing protein; KEGG: cth:Cthe_1373 YD repeat-containing protein; SMART: Kelch repeat type 1-containing protein.
 
   
0.798
Cpap_3695
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain-containing protein; KEGG: cce:Ccel_2643 peptidase S8/S53 subtilisin kexin sedolisin.
  
 
  0.761
Cpap_2327
KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
  
 0.655
Cpap_0545
PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: mac:MA0850 cell surface protein.
  
    0.648
Cpap_1422
KEGG: amd:AMED_7297 rhs family protein.
  
 0.643
Cpap_0546
KEGG: cth:Cthe_1373 YD repeat-containing protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
    0.520
Cpap_0952
KEGG: slp:Slip_1811 fibronectin type III domain protein; PFAM: Kelch repeat type 1-containing protein; Fibronectin type III domain protein; SMART: Kelch repeat type 1-containing protein; Fibronectin type III domain protein.
  
  0.513
Cpap_1404
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cce:Ccel_3447 peptidase S8/S53 subtilisin kexin sedolisin.
  
     0.500
Cpap_3275
PFAM: Dockerin type 1; leucine-rich repeat-containing protein; KEGG: ctc:CTC00495 internalin A-like protein/putative S-layer protein.
  
  0.463
Cpap_0722
KEGG: cce:Ccel_2489 Na-Ca exchanger/integrin-beta4; PFAM: Na-Ca exchanger/integrin-beta4; S-layer domain-containing protein; SMART: Na-Ca exchanger/integrin-beta4.
  
  0.442
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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