STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0544TIGRFAM: YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; YD repeat-containing protein; Kelch repeat type 1-containing protein; KEGG: cth:Cthe_1373 YD repeat-containing protein; SMART: Kelch repeat type 1-containing protein. (2309 aa)    
Predicted Functional Partners:
Cpap_0543
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bmd:BMD_0297 subtilisin like serine protease.
 
   
0.798
Cpap_0346
KEGG: cce:Ccel_2917 hypothetical protein.
 
 
 0.764
Cpap_2327
KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
  
 0.726
Cpap_1532
Hypothetical protein; KEGG: spi:MGAS10750_Spy0884 phage protein.
  
 
 0.713
Cpap_2479
PFAM: Collagen triple helix repeat-containing protein; KEGG: bli:BL03072 hypothetical protein.
  
 
 0.713
Cpap_2750
KEGG: amr:AM1_0870 hypothetical protein.
  
 
 0.713
Cpap_3390
KEGG: cbl:CLK_0742 hypothetical protein.
  
 
 0.713
Cpap_0545
PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: mac:MA0850 cell surface protein.
  
    0.691
Cpap_1422
KEGG: amd:AMED_7297 rhs family protein.
   
 0.687
Cpap_0757
Manually curated; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: cce:Ccel_2465 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.
   
 0.618
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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