STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0555PFAM: RbsD or FucU transport; KEGG: ctc:CTC00903 hypothetical protein; Belongs to the RbsD / FucU family. (137 aa)    
Predicted Functional Partners:
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.904
Cpap_2894
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1984 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.807
Cpap_0554
PFAM: sugar isomerase (SIS); KEGG: apv:Apar_1282 sugar isomerase (SIS).
 
     0.773
Cpap_0906
KEGG: bpo:BP951000_2321 ABC type I periplasmic-binding protein (pbp1) family.
 
  
 0.763
Cpap_1713
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1642 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.732
Cpap_2809
Hypothetical protein; KEGG: cdl:CDR20291_0303 D-ribose ABC transporter, substrate-binding protein.
  
  
 0.698
Cpap_3296
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1223 periplasmic binding protein/LacI transcriptional regulator.
  
  
 0.698
Cpap_0904
KEGG: amt:Amet_0587 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.696
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.696
Cpap_2807
ABC transporter related protein; KEGG: dth:DICTH_0297 ribose transport ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.696
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.