STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0589Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_2614 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family. (326 aa)    
Predicted Functional Partners:
Cpap_3332
PFAM: glycoside hydrolase family 43; KEGG: cce:Ccel_1257 glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.833
Cpap_3311
KEGG: cce:Ccel_1240 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; protein of unknown function DUF303 acetylesterase; SMART: cellulose binding type IV.
 
  
  0.801
Cpap_3305
Glycoside hydrolase family 43; KEGG: cce:Ccel_1233 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
  
 0.793
Cpap_1636
Hypothetical protein; Manually curated; KEGG: ttu:TERTU_4677 hypothetical protein.
  
  
  0.788
Cpap_2220
Alpha-glucuronidase; KEGG: cce:Ccel_0141 glycosyl hydrolase 67 middle domain protein; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.771
Cpap_3330
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cce:Ccel_1255 alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
 
 0.758
Cpap_1192
KEGG: cce:Ccel_0931 glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; Dockerin type 1; SMART: glycoside hydrolase family 10.
  
 
 0.754
Cpap_3302
Glycoside hydrolase family 10; KEGG: cce:Ccel_1230 carbohydrate binding family 6; PFAM: glycoside hydrolase family 10; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; glycoside hydrolase family 10.
 
  
 0.748
Cpap_2940
Alpha-N-arabinofuranosidase; PFAM: Carbohydrate binding family 6; glycoside hydrolase family 43; Dockerin type 1; KEGG: cce:Ccel_1229 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
  
0.745
Cpap_3306
KEGG: cce:Ccel_1234 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
  
  0.745
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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