STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0594PFAM: regulatory protein GntR HTH; KEGG: cce:Ccel_2609 transcriptional regulator, GntR family. (122 aa)    
Predicted Functional Partners:
Cpap_0595
KEGG: cce:Ccel_2608 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.964
Cpap_0596
KEGG: cce:Ccel_2607 hypothetical protein.
       0.820
Cpap_2984
KEGG: cce:Ccel_1917 putative ABC transporter, peremase protein.
  
  
 0.616
Cpap_0593
KEGG: cce:Ccel_2610 hypothetical protein.
       0.485
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: high (88%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.