STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0617KEGG: cce:Ccel_2030 GTP-binding signal recognition particle SRP54 G-domain protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase. (343 aa)    
Predicted Functional Partners:
Cpap_0616
KEGG: cce:Ccel_2029 cobyrinic acid ac-diamide synthase.
 
 
 0.998
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
 
 
 0.987
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.955
Cpap_0627
KEGG: cce:Ccel_2039 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
 
 
 0.945
Cpap_0638
Manually curated; TIGRFAM: flagellar motor switch protein FliG; KEGG: cce:Ccel_2050 flagellar motor switch protein G; PFAM: flagellar motor switch protein FliG; MgtE intracellular region.
 
 
 0.941
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
  
 0.920
Cpap_0633
PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: cce:Ccel_2045 flagellar hook-length control protein.
 
  
 0.892
Cpap_0624
KEGG: cce:Ccel_2036 hypothetical protein.
  
  
 0.885
fliE
KEGG: cce:Ccel_2052 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE.
 
  
 0.864
Cpap_0639
KEGG: cce:Ccel_2051 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: Flagellar M-ring domain protein; secretory protein YscJ/FliF family protein.
 
  
 0.853
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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