STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0668PFAM: Coat F domain protein; KEGG: cce:Ccel_2078 coat F domain protein. (89 aa)    
Predicted Functional Partners:
Cpap_0669
KEGG: cce:Ccel_2079 hypothetical protein.
  
  
 0.776
Cpap_3826
Transcriptional regulator, LuxR family; KEGG: amt:Amet_1060 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.537
Cpap_2630
KEGG: cce:Ccel_2523 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.503
Cpap_0832
KEGG: cce:Ccel_2212 hypothetical protein.
  
     0.502
Cpap_0670
TIGRFAM: potassium uptake protein, TrkH family; KEGG: cce:Ccel_2080 potassium uptake protein, TrkH family; PFAM: cation transporter.
       0.475
Cpap_0725
KEGG: cce:Ccel_2487 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1.
  
     0.449
Cpap_2100
PFAM: peptidase U57 YabG; KEGG: cce:Ccel_0019 hypothetical protein.
  
    0.429
Cpap_3337
Transcriptional regulator, LuxR family; KEGG: tex:Teth514_0348 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.423
Cpap_0667
KEGG: cth:Cthe_0973 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
       0.420
Cpap_0036
KEGG: amt:Amet_1284 spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.402
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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