STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa)    
Predicted Functional Partners:
Cpap_2162
KEGG: cce:Ccel_0091 regulatory protein, MerR.
   
 0.965
Cpap_2410
KEGG: cce:Ccel_3346 regulatory protein, MerR.
   
 0.965
Cpap_2954
PFAM: Domain of unknown function DUF3298; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1942 copper amine oxidase domain protein.
   
 0.965
Cpap_3612
Hypothetical protein; KEGG: npu:Npun_F0545 WD-40 repeat-containing protein.
   
 0.965
Cpap_1296
Cold-shock protein DNA-binding; KEGG: tet:TTHERM_00518520 TPR Domain containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; Tetratricopeptide repeat.
   
 0.959
Cpap_3058
PFAM: Rhomboid family protein; KEGG: cce:Ccel_1860 rhomboid family protein.
  
 0.956
Cpap_1581
KEGG: cce:Ccel_0602 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 0.955
Cpap_3954
KEGG: cce:Ccel_1187 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein.
   
 0.955
Cpap_1023
KEGG: cce:Ccel_0432 hypothetical protein.
   
 0.952
Cpap_2059
KEGG: cce:Ccel_0390 hypothetical protein.
   
 0.952
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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