STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0721KEGG: cce:Ccel_2490 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Cpap_0720
PFAM: Tail Collar domain protein; KEGG: cce:Ccel_2491 tail collar domain protein.
 
     0.710
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
    
  0.706
Cpap_0722
KEGG: cce:Ccel_2489 Na-Ca exchanger/integrin-beta4; PFAM: Na-Ca exchanger/integrin-beta4; S-layer domain-containing protein; SMART: Na-Ca exchanger/integrin-beta4.
   
  0.678
cinA
TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; SMART: molybdopterin binding domain.
    
  0.674
Cpap_1929
KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
 
  0.643
Cpap_0719
PFAM: Tail Collar domain protein; KEGG: cce:Ccel_2492 tail collar domain protein.
 
     0.629
Cpap_0718
PFAM: Tail Collar domain protein; KEGG: cce:Ccel_2492 tail collar domain protein.
 
     0.624
Cpap_0717
PFAM: Tail Collar domain protein; KEGG: cce:Ccel_2493 tail collar domain protein.
 
     0.592
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
  
 0.591
Cpap_3849
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_1099 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.591
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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