STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0723PFAM: peptidase M4 thermolysin; Peptidase M4 thermolysin; Propeptide peptidase M4 and M36; KEGG: bmq:BMQ_2326 bacillolysin precursor (neutral protease). (895 aa)    
Predicted Functional Partners:
Cpap_2048
PFAM: coagulation factor 5/8 type domain protein; protein of unknown function DUF291; Dockerin type 1; glycoside hydrolase family 5; KEGG: cce:Ccel_0379 protein of unknown function DUF291.
  
  
 0.487
Cpap_0254
PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; Dockerin type 1; KEGG: cce:Ccel_0732 glycoside hydrolase family 9.
   
    0.441
Cpap_2753
PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; Dockerin type 1; KEGG: cce:Ccel_2392 glycoside hydrolase family 9.
   
    0.441
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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