STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0735KEGG: cce:Ccel_2478 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein. (142 aa)    
Predicted Functional Partners:
Cpap_1845
KEGG: cce:Ccel_1535 serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 
 0.980
Cpap_0736
PFAM: cell cycle protein; KEGG: cce:Ccel_2477 cell cycle protein; Belongs to the SEDS family.
 
   
 0.904
Cpap_0737
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2476 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase.
 
   
 0.862
Cpap_1422
KEGG: amd:AMED_7297 rhs family protein.
  
 
  0.850
Cpap_1073
KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
   
 
 0.845
Cpap_2180
KEGG: cce:Ccel_0111 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain.
 
 
 0.826
Cpap_2327
KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
    
  0.821
Cpap_3022
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
  
 
 0.817
Cpap_2669
KEGG: cce:Ccel_2569 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
    
  0.772
Cpap_1296
Cold-shock protein DNA-binding; KEGG: tet:TTHERM_00518520 TPR Domain containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; Tetratricopeptide repeat.
  
 0.758
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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