Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cpap_0804KEGG: cce:Ccel_2432 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Cpap_0805
PFAM: pseudouridine synthase; KEGG: cce:Ccel_2431 pseudouridine synthase.
 
 
 
 0.912
Cpap_0803
KEGG: cce:Ccel_2433 hypothetical protein.
       0.596
Cpap_2874
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.582
Cpap_0807
rRNA (guanine-N(2)-)-methyltransferase; KEGG: cce:Ccel_2429 putative RNA methylase; PFAM: RNA methylase; THUMP domain-containing protein; Belongs to the methyltransferase superfamily.
  
  
 0.444
Cpap_0802
Agmatinase; KEGG: cce:Ccel_2434 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
    0.427
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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