STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0855KEGG: cce:Ccel_0112 SAF domain protein. (241 aa)    
Predicted Functional Partners:
Cpap_0857
PFAM: type II secretion system protein E; KEGG: cce:Ccel_0114 type II secretion system protein E.
  
  
 0.814
Cpap_0017
KEGG: cce:Ccel_0502 hypothetical protein.
  
  
 0.794
Cpap_0850
KEGG: btb:BMB171_P0099 hypothetical protein.
       0.773
Cpap_0851
KEGG: bcz:pE33L466_0231 hypothetical protein.
       0.773
Cpap_0852
KEGG: btb:BMB171_P0104 hypothetical protein.
       0.773
Cpap_0853
PFAM: Peptidase M23; KEGG: oih:OB2367 hypothetical protein.
       0.773
Cpap_0854
KEGG: aoe:Clos_1908 hypothetical protein.
       0.773
Cpap_0849
KEGG: btb:BMB171_P0098 hypothetical protein.
       0.737
Cpap_0154
KEGG: cce:Ccel_2774 hypothetical protein.
  
  
 0.733
Cpap_0856
KEGG: cce:Ccel_0113 hypothetical protein.
       0.709
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.