STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0901KEGG: cce:Ccel_2192 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (187 aa)    
Predicted Functional Partners:
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
  
 
  0.862
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
  
  0.859
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
  0.820
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
  0.745
Cpap_2162
KEGG: cce:Ccel_0091 regulatory protein, MerR.
    
  0.588
Cpap_2410
KEGG: cce:Ccel_3346 regulatory protein, MerR.
    
  0.588
Cpap_2954
PFAM: Domain of unknown function DUF3298; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1942 copper amine oxidase domain protein.
    
  0.588
Cpap_3612
Hypothetical protein; KEGG: npu:Npun_F0545 WD-40 repeat-containing protein.
    
  0.588
Cpap_2177
KEGG: cce:Ccel_0108 kelch repeat protein; PFAM: Kelch repeat type 1-containing protein; SMART: Kelch repeat type 1-containing protein.
  
     0.532
Cpap_0899
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bca:BCE_5495 hypothetical protein.
       0.453
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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