STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0908PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: cce:Ccel_2188 peptidoglycan-binding domain 1 protein. (508 aa)    
Predicted Functional Partners:
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
  
 
 0.834
Cpap_2114
PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: cce:Ccel_0033 NLP/P60 protein.
  
     0.622
Cpap_0962
PFAM: Dockerin type 1; KEGG: cce:Ccel_0417 cellulosome protein dockerin type I.
  
 
  0.615
Cpap_0168
PFAM: NLP/P60 protein; KEGG: cce:Ccel_2749 NLP/P60 protein.
 
  
 0.602
Cpap_2059
KEGG: cce:Ccel_0390 hypothetical protein.
 
 
   0.531
Cpap_2450
KEGG: cce:Ccel_3323 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; SH3 domain-containing protein.
  
     0.482
Cpap_0117
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
  
 0.474
Cpap_2247
KEGG: cce:Ccel_0168 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.
 
     0.469
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.459
Cpap_0040
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cce:Ccel_0520 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
  
 
 0.446
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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