STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0939PFAM: Carbohydrate binding family 25; KEGG: cce:Ccel_2169 carbohydrate-binding family 25 protein. (123 aa)    
Predicted Functional Partners:
Cpap_3127
PFAM: glycosyl transferase group 1; Starch synthase catalytic domain-containing protein; KEGG: cce:Ccel_1773 glycosyl transferase group 1.
  
     0.722
Cpap_3657
PFAM: tryptophan RNA-binding attenuator protein; KEGG: cce:Ccel_1460 transcription attenuation protein MtrB.
  
     0.721
Cpap_3169
PFAM: HutP family protein; KEGG: cce:Ccel_1731 hypothetical protein.
  
     0.682
Cpap_3208
KEGG: cce:Ccel_1698 hypothetical protein; Belongs to the UPF0342 family.
  
     0.668
Cpap_0490
PFAM: NADPH-dependent FMN reductase; KEGG: cce:Ccel_0549 NADPH-dependent FMN reductase.
  
     0.626
Cpap_3744
KEGG: cce:Ccel_0955 accessory gene regulator B; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.626
Cpap_0129
KEGG: cce:Ccel_0955 accessory gene regulator B; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.586
Cpap_1949
KEGG: cce:Ccel_0277 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.554
Cpap_2005
PFAM: glycoside hydrolase 15-related; KEGG: cce:Ccel_0335 glycoside hydrolase 15-related.
  
   
 0.544
Cpap_2093
KEGG: cce:Ccel_0013 hypothetical protein.
  
     0.536
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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