STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0962PFAM: Dockerin type 1; KEGG: cce:Ccel_0417 cellulosome protein dockerin type I. (848 aa)    
Predicted Functional Partners:
Cpap_2567
Hypothetical protein; KEGG: str:Sterm_1441 phage tape measure protein.
  
    0.835
Cpap_3314
KEGG: cce:Ccel_1242 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; SMART: cellulose binding type IV.
  
   
 0.769
Cpap_2855
Glucuronoarabinoxylan endo-1,4-beta-xylanase; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; KEGG: cce:Ccel_1242 carbohydrate binding family 6; SMART: cellulose binding type IV.
  
   
 0.767
Cpap_2753
PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; Dockerin type 1; KEGG: cce:Ccel_2392 glycoside hydrolase family 9.
 
  
  0.755
Cpap_0254
PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; Dockerin type 1; KEGG: cce:Ccel_0732 glycoside hydrolase family 9.
 
  
  0.753
Cpap_2846
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0840 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.736
Cpap_3229
PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_2621 glycoside hydrolase family 9 domain protein Ig domain protein.
 
  
 0.736
Cpap_3302
Glycoside hydrolase family 10; KEGG: cce:Ccel_1230 carbohydrate binding family 6; PFAM: glycoside hydrolase family 10; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; glycoside hydrolase family 10.
  
     0.723
Cpap_1636
Hypothetical protein; Manually curated; KEGG: ttu:TERTU_4677 hypothetical protein.
 
  
  0.722
Cpap_3311
KEGG: cce:Ccel_1240 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; protein of unknown function DUF303 acetylesterase; SMART: cellulose binding type IV.
  
     0.720
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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