STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_0990KEGG: smb:smi_1718 ABC transporter ABC nucleotide-binding domain; PFAM: ABC transporter related; SMART: AAA ATPase. (245 aa)    
Predicted Functional Partners:
Cpap_0991
KEGG: cpy:Cphy_3007 hypothetical protein.
 
     0.940
Cpap_2290
KEGG: cce:Ccel_0196 putative ABC transporter, permease protein.
 
    0.815
Cpap_3920
KEGG: cce:Ccel_1151 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 
0.748
Cpap_1703
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.669
metN-2
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
  
 
0.629
ecfA
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.623
Cpap_0989
PFAM: protein of unknown function DUF1648; KEGG: cdl:CDR20291_1919 hypothetical protein.
       0.575
Cpap_0988
KEGG: gym:GYMC10_4762 protein of unknown function DUF1648.
       0.564
ecfA-2
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.563
Cpap_0987
Regulatory protein ArsR; KEGG: gym:GYMC10_4763 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.553
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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