STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1004PFAM: peptidase M16 domain protein; KEGG: ddf:DEFDS_0496 peptidase M16 family. (379 aa)    
Predicted Functional Partners:
Cpap_0775
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: cce:Ccel_2448 FAD dependent oxidoreductase.
   
 0.987
Cpap_4137
KEGG: cce:Ccel_2303 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; iron hydrogenase small subunit; ferredoxin.
   
 
 0.909
Cpap_2387
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cce:Ccel_3368 NADH dehydrogenase (ubiquinone) 30 kDa subunit.
   
 
 0.882
Cpap_2389
KEGG: cce:Ccel_3366 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.875
Cpap_3220
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cce:Ccel_1686 NADH ubiquinone oxidoreductase 20 kDa subunit.
  
 
 0.875
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 0.865
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
  
 0.865
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
  
 0.865
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
   
 0.836
Cpap_4108
KEGG: cce:Ccel_2329 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NLI interacting domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
   
  0.817
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.