STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1008Hypothetical protein. (40 aa)    
Predicted Functional Partners:
Cpap_1005
KEGG: cce:Ccel_2517 hypothetical protein.
       0.526
Cpap_1006
KEGG: bbe:BBR47_10410 ABC transporter ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.526
Cpap_1007
Manually curated; PFAM: ABC transporter related; KEGG: amr:AM1_1912 ABC transporter, ATP-binding/permease protein; SMART: AAA ATPase.
       0.526
Cpap_0998
PFAM: Radical SAM domain protein; KEGG: gem:GM21_3455 radical SAM domain protein.
       0.472
Cpap_0999
KEGG: gem:GM21_3455 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.472
Cpap_1000
Radical SAM domain protein; KEGG: mac:MA3185 MoaA/NifB/PqqE family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.472
Cpap_1001
KEGG: dfe:Dfer_1996 hypothetical protein.
       0.472
Cpap_1002
KEGG: cbb:CLD_1476 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.472
Cpap_1003
Hypothetical protein; KEGG: csc:Csac_0653 arylsulfatase regulator (Fe-S oxidoreductase)-like protein.
       0.472
Cpap_1004
PFAM: peptidase M16 domain protein; KEGG: ddf:DEFDS_0496 peptidase M16 family.
       0.472
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.