STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1020PFAM: Resolvase domain; Recombinase; KEGG: cce:Ccel_0430 resolvase domain protein. (537 aa)    
Predicted Functional Partners:
Cpap_0001
Hypothetical protein; Manually curated; KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
     0.772
Cpap_0183
PFAM: Recombinase; KEGG: cce:Ccel_2730 recombinase.
 
     0.727
Cpap_0951
Resolvase domain; KEGG: cth:Cthe_1294 recombinase; PFAM: Resolvase domain; SMART: Resolvase domain.
  
     0.647
Cpap_1272
TIGRFAM: phage major capsid protein, HK97 family; KEGG: afl:Aflv_0664 phage major capsid protein.
  
  
 0.554
Cpap_1238
SMART: helix-turn-helix domain protein; KEGG: dae:Dtox_3293 transcriptional regulator, XRE family.
  
     0.514
Cpap_1017
Recombinase; KEGG: cce:Ccel_3111 resolvase domain protein; PFAM: Recombinase; Resolvase domain; SMART: Resolvase domain.
 
    
0.477
Cpap_1019
KEGG: cce:Ccel_0429 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.
  
    0.470
Cpap_3744
KEGG: cce:Ccel_0955 accessory gene regulator B; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.404
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.