STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1022Hypothetical protein; KEGG: cce:Ccel_0431 putative spore-coat protein. (161 aa)    
Predicted Functional Partners:
Cpap_1021
Manganese containing catalase; KEGG: cac:CA_C1338 spore coat protein CotJC; manually curated; PFAM: manganese containing catalase.
 
  
 0.955
Cpap_1023
KEGG: cce:Ccel_0432 hypothetical protein.
  
    0.866
Cpap_0109
KEGG: cth:Cthe_1021 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
  
 0.740
Cpap_2992
KEGG: cce:Ccel_1909 hypothetical protein.
  
  
 0.689
Cpap_2529
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cbt:CLH_0496 sporulation transcriptional regulator spoiiid.
  
    0.681
Cpap_0309
SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: cce:Ccel_2986 stage II sporulation protein E, protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; Cl- channel voltage-gated family protein.
  
     0.673
Cpap_4162
KEGG: cce:Ccel_2281 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
  
     0.673
Cpap_2556
KEGG: cce:Ccel_3083 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
  
     0.670
Cpap_1552
KEGG: cce:Ccel_0573 sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD.
  
     0.660
Cpap_0651
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.658
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.