STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1031KEGG: cce:Ccel_0440 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain. (552 aa)    
Predicted Functional Partners:
Cpap_1030
KEGG: cce:Ccel_0439 hypothetical protein.
       0.773
Cpap_0001
Hypothetical protein; Manually curated; KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
     0.752
Cpap_1029
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: cce:Ccel_0438 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
       0.492
Cpap_1028
KEGG: cce:Ccel_0437 extracellular solute-binding protein family 3.
       0.454
Cpap_1026
KEGG: cce:Ccel_0435 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.435
Cpap_1027
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0436 binding-protein-dependent transport systems inner membrane component.
       0.435
Cpap_0183
PFAM: Recombinase; KEGG: cce:Ccel_2730 recombinase.
  
     0.425
Cpap_1033
PFAM: protein of unknown function DUF1680; KEGG: pjd:Pjdr2_4282 protein of unknown function DUF1680.
       0.418
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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