STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1033PFAM: protein of unknown function DUF1680; KEGG: pjd:Pjdr2_4282 protein of unknown function DUF1680. (743 aa)    
Predicted Functional Partners:
Cpap_1726
PFAM: Ig domain protein; glycoside hydrolase family 43; Dockerin type 1; KEGG: scb:SCAB_11431 putative hydrolase.
 
   
 0.765
Cpap_3307
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_1235 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
   
 0.765
Cpap_3303
Glycoside hydrolase family 43; KEGG: cce:Ccel_1231 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
   
 0.760
Cpap_3312
PFAM: coagulation factor 5/8 type domain protein; Dockerin type 1; KEGG: cce:Ccel_1241 carbohydrate binding family 6.
  
     0.758
Cpap_0764
Alpha-L-fucosidase; KEGG: gym:GYMC10_5610 alpha-L-fucosidase.
  
     0.751
Cpap_2266
PFAM: glycoside hydrolase clan GH-D; KEGG: pjd:Pjdr2_3562 hypothetical protein.
 
     0.751
Cpap_2940
Alpha-N-arabinofuranosidase; PFAM: Carbohydrate binding family 6; glycoside hydrolase family 43; Dockerin type 1; KEGG: cce:Ccel_1229 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
   
 0.750
Cpap_3330
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cce:Ccel_1255 alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
   
 0.743
Cpap_3319
PFAM: Pectinesterase; Dockerin type 1; KEGG: cce:Ccel_1246 pectinesterase.
  
     0.725
Cpap_3329
Alpha-N-arabinofuranosidase; KEGG: afl:Aflv_0532 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Ig domain protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.724
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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