STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1034Recombinase; KEGG: aoe:Clos_1652 recombinase; PFAM: Recombinase; Resolvase domain; SMART: Resolvase domain. (520 aa)    
Predicted Functional Partners:
Cpap_0001
Hypothetical protein; Manually curated; KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
     0.700
Cpap_0184
PFAM: Resolvase domain; Recombinase; KEGG: cce:Ccel_2729 resolvase domain protein.
 
     0.595
Cpap_1035
KEGG: cbb:CLD_2414 hypothetical protein.
       0.524
Cpap_0183
PFAM: Recombinase; KEGG: cce:Ccel_2730 recombinase.
 
     0.455
Cpap_3316
KEGG: cce:Ccel_1244 hypothetical protein; manually curated; PFAM: glutaredoxin 2.
  
    0.425
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.