STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1064PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214. (405 aa)    
Predicted Functional Partners:
Cpap_1061
KEGG: cce:Ccel_0466 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.991
Cpap_3580
KEGG: csc:Csac_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.983
Cpap_2495
KEGG: ckr:CKR_0343 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.979
Cpap_4184
KEGG: pth:PTH_0038 peptide ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.977
Cpap_3709
KEGG: cce:Ccel_0855 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.969
Cpap_2309
KEGG: bcz:pE33L466_0064 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.952
Cpap_1063
KEGG: cce:Ccel_0468 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
 
  
 0.940
Cpap_2766
KEGG: lwe:lwe2530 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.935
Cpap_4089
KEGG: cce:Ccel_2356 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  0.892
Cpap_3459
KEGG: cpy:Cphy_2590 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  0.883
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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