Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cpap_1069PFAM: cell cycle protein; KEGG: cce:Ccel_0474 rod shape-determining protein RodA; Belongs to the SEDS family. (373 aa)    
Predicted Functional Partners:
Cpap_1073
KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 0.945
Cpap_2661
TIGRFAM: penicillin-binding protein 2; KEGG: cce:Ccel_2560 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
 0.945
Cpap_0737
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2476 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase.
 
 0.940
Cpap_1077
KEGG: cce:Ccel_0482 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
 
  
 
0.930
Cpap_3680
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cce:Ccel_1486 penicillin-binding protein transpeptidase.
 
 0.929
Cpap_0736
PFAM: cell cycle protein; KEGG: cce:Ccel_2477 cell cycle protein; Belongs to the SEDS family.
  
  
 
0.921
Cpap_0655
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.907
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.854
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.840
Cpap_1072
KEGG: cce:Ccel_0477 cell division protein FtsL.
  
 
 0.825
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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