STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1072KEGG: cce:Ccel_0477 cell division protein FtsL. (160 aa)    
Predicted Functional Partners:
Cpap_0655
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
 
 
 0.989
Cpap_2558
PFAM: Septum formation initiator; KEGG: cce:Ccel_3081 septum formation initiator.
    
 
 0.931
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.885
Cpap_1073
KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 0.882
mraZ
MraZ protein; KEGG: cce:Ccel_0475 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; Belongs to the MraZ family.
  
  
 0.846
Cpap_1949
KEGG: cce:Ccel_0277 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.739
Cpap_2211
KEGG: cce:Ccel_0132 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein.
  
  
 0.732
Cpap_2661
TIGRFAM: penicillin-binding protein 2; KEGG: cce:Ccel_2560 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
 
 0.732
Cpap_1574
KEGG: cce:Ccel_0595 hypothetical protein.
  
     0.727
Cpap_1069
PFAM: cell cycle protein; KEGG: cce:Ccel_0474 rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 0.719
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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