STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1079PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_0484 small acid-soluble spore protein alpha/beta type. (64 aa)    
Predicted Functional Partners:
Cpap_3641
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_1444 small acid-soluble spore protein alpha/beta type.
  
     0.666
Cpap_2098
KEGG: cce:Ccel_0017 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: Choline/ethanolamine kinase.
  
    0.584
Cpap_2556
KEGG: cce:Ccel_3083 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
  
     0.540
Cpap_1021
Manganese containing catalase; KEGG: cac:CA_C1338 spore coat protein CotJC; manually curated; PFAM: manganese containing catalase.
  
    0.533
Cpap_4204
PFAM: phosphoryl transfer system HPr; KEGG: cce:Ccel_2245 HPrNtr domain-containing protein.
  
     0.490
Cpap_2992
KEGG: cce:Ccel_1909 hypothetical protein.
  
   
 0.441
Cpap_2445
KEGG: cce:Ccel_3326 hypothetical protein.
  
    0.438
Cpap_3166
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: cce:Ccel_1734 transcriptional regulator, RpiR family.
  
     0.402
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.