STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1105PFAM: ThiJ/PfpI domain-containing protein; KEGG: amt:Amet_1453 ThiJ/PfpI domain-containing protein. (199 aa)    
Predicted Functional Partners:
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.617
Cpap_2206
PFAM: isochorismatase hydrolase; KEGG: geo:Geob_0184 isochorismatase hydrolase.
 
    0.565
Cpap_2428
PFAM: iron-containing alcohol dehydrogenase; KEGG: cce:Ccel_3337 iron-containing alcohol dehydrogenase.
   
    0.527
Cpap_1104
PFAM: transcription activator effector binding; KEGG: cpy:Cphy_2168 hypothetical protein.
       0.500
Cpap_1130
PFAM: isochorismatase hydrolase; KEGG: cbk:CLL_A2160 hydrolase, isochorismatase family.
 
    0.472
Cpap_1103
KEGG: cdf:CD0276 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; SMART: Helix-turn-helix, AraC domain.
 
 
 0.461
Cpap_3353
PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2368 hypothetical protein.
  
    0.426
Cpap_3784
PFAM: isochorismatase hydrolase; KEGG: cce:Ccel_1079 isochorismatase hydrolase.
 
    0.416
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.