STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1121KEGG: cce:Ccel_2739 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Cpap_1122
PFAM: regulatory protein TetR; KEGG: bpo:BP951000_1357 regulatory protein, TetR family.
       0.705
Cpap_1123
KEGG: azc:AZC_0570 hypothetical protein.
       0.490
Cpap_3692
KEGG: cce:Ccel_2638 transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: transcription activator effector binding; regulatory protein MerR.
  
     0.464
Cpap_2478
Glycosyl transferase family 2; KEGG: bld:BLi00807 hypothetical protein; PFAM: glycosyl transferase family 2; SMART: Tetratricopeptide repeat.
  
     0.422
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.