STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1134PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_1518 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Cpap_1133
PFAM: Radical SAM domain protein; KEGG: cbh:CLC_0497 radical SAM domain-containing protein.
 
     0.915
Cpap_1132
KEGG: sat:SYN_02410 putative cytoplasmic protein.
       0.770
Cpap_1422
KEGG: amd:AMED_7297 rhs family protein.
  
 0.686
Cpap_0258
PFAM: Dockerin type 1; KEGG: cce:Ccel_0736 cellulosome protein dockerin type I.
  
  0.678
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
     0.675
Cpap_2754
KEGG: cce:Ccel_2393 S-layer domain protein; PFAM: copper amine oxidase-like domain-containing protein; SMART: Parallel beta-helix repeat.
  
     0.667
Cpap_2272
PFAM: Radical SAM domain protein; KEGG: cbh:CLC_0497 radical SAM domain-containing protein.
 
     0.652
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
  
 0.648
Cpap_2327
KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
  
 0.640
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
  
    0.637
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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