STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1155PFAM: ABC-2 type transporter; KEGG: tro:trd_A0466 putative integral membrane protein. (249 aa)    
Predicted Functional Partners:
Cpap_1154
KEGG: sus:Acid_6967 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.937
Cpap_2369
KEGG: cbi:CLJ_B0777 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.855
Cpap_1204
KEGG: ote:Oter_3573 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.796
Cpap_1205
PFAM: ABC-2 type transporter; KEGG: sru:SRU_0751 putative integral membrane protein.
  
  
  0.785
Cpap_1156
KEGG: nmr:Nmar_0143 hypothetical protein.
       0.778
Cpap_1151
PFAM: protein of unknown function DUF181; KEGG: cbl:CLK_3700 streptolysin associated protein SagD.
 
  
 0.730
Cpap_1149
SagB-type dehydrogenase domain; KEGG: cby:CLM_0573 streptolysin associated protein SagB; TIGRFAM: SagB-type dehydrogenase domain; PFAM: nitroreductase.
 
    0.667
Cpap_2368
Regulatory protein MerR; KEGG: cbi:CLJ_B0776 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
     0.658
Cpap_0289
PFAM: ABC-2 type transporter; KEGG: msi:Msm_1484 multidrug ABC transporter, permease component.
  
  
  0.582
Cpap_1152
PFAM: Abortive infection protein; KEGG: cbf:CLI_0570 CAAX amino terminal protease family protein.
  
    0.573
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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