STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1194Hypothetical protein; KEGG: mfe:Mefer_0174 TPR repeat-containing protein. (219 aa)    
Predicted Functional Partners:
Cpap_1193
PFAM: Nitrile hydratase alpha chain; KEGG: cag:Cagg_1021 hypothetical protein.
       0.773
Cpap_1195
Hypothetical protein; KEGG: sak:SAK_1584 D-3-phosphoglycerate dehydrogenase, putative.
       0.628
Cpap_1196
Hypothetical protein; KEGG: hor:Hore_16400 polysaccharide pyruvyl transferase.
       0.628
Cpap_1197
KEGG: ptm:GSPATT00035995001 hypothetical protein.
       0.485
Cpap_1198
PFAM: Nucleotidyl transferase; KEGG: mgm:Mmc1_2445 nucleotidyl transferase.
       0.485
Cpap_1192
KEGG: cce:Ccel_0931 glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; Dockerin type 1; SMART: glycoside hydrolase family 10.
       0.411
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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