STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1199Radical SAM domain protein; KEGG: sto:ST1383 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (300 aa)    
Predicted Functional Partners:
Cpap_1201
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.776
Cpap_1200
Hypothetical protein; KEGG: tme:Tmel_0375 polysaccharide deacetylase.
       0.773
Cpap_1000
Radical SAM domain protein; KEGG: mac:MA3185 MoaA/NifB/PqqE family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.749
Cpap_1202
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.699
Cpap_1224
KEGG: dal:Dalk_4338 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.677
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.660
Cpap_2904
Radical SAM domain protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.
 
  
 0.580
Cpap_1197
KEGG: ptm:GSPATT00035995001 hypothetical protein.
       0.576
Cpap_1198
PFAM: Nucleotidyl transferase; KEGG: mgm:Mmc1_2445 nucleotidyl transferase.
  
    0.576
Cpap_3829
Radical SAM domain protein; KEGG: mxa:MXAN_4597 putative methyltransferase; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
    0.509
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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