STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (359 aa)    
Predicted Functional Partners:
Cpap_1218
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mta:Moth_0429 mannitol dehydrogenase.
 
 
 0.986
Cpap_2218
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: cce:Ccel_0139 mannitol dehydrogenase domain protein.
 
 
 0.969
uxaC
KEGG: cce:Ccel_0214 glucuronate isomerase; PFAM: Glucuronate isomerase.
 
  
 0.964
Cpap_2510
PFAM: PfkB domain protein; KEGG: cce:Ccel_3191 PfkB domain protein.
 
  
 0.884
Cpap_1914
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: cce:Ccel_0259 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
   
 
  0.718
Cpap_3509
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: clj:CLJU_c27650 mandelate racemase family protein.
    
 0.691
Cpap_1228
PFAM: PfkB domain protein; KEGG: cce:Ccel_0954 PfkB domain protein.
    
 0.646
Cpap_1715
KEGG: cce:Ccel_1640 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
   
 
  0.620
Cpap_2508
KEGG: cce:Ccel_3193 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein.
 
   
 0.575
Cpap_2509
KEGG: cce:Ccel_3192 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
   
 0.575
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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