STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1238SMART: helix-turn-helix domain protein; KEGG: dae:Dtox_3293 transcriptional regulator, XRE family. (70 aa)    
Predicted Functional Partners:
Cpap_0184
PFAM: Resolvase domain; Recombinase; KEGG: cce:Ccel_2729 resolvase domain protein.
  
     0.689
Cpap_4222
Recombinase; KEGG: dae:Dtox_3285 recombinase; PFAM: Recombinase; Resolvase domain; SMART: Resolvase domain.
  
     0.689
Cpap_0182
KEGG: cce:Ccel_2731 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain.
  
     0.688
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
  0.681
Cpap_0183
PFAM: Recombinase; KEGG: cce:Ccel_2730 recombinase.
  
     0.675
Cpap_0985
KEGG: cce:Ccel_0427 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain.
  
     0.673
Cpap_0951
Resolvase domain; KEGG: cth:Cthe_1294 recombinase; PFAM: Resolvase domain; SMART: Resolvase domain.
  
     0.650
Cpap_1239
PFAM: Protein of unknown function DUF3320; KEGG: mvn:Mevan_0087 superfamily I DNA/RNA helicase.
       0.637
Cpap_0162
DNA-cytosine methyltransferase; KEGG: dsy:DSY0044 hypothetical protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
  
  0.577
Cpap_1017
Recombinase; KEGG: cce:Ccel_3111 resolvase domain protein; PFAM: Recombinase; Resolvase domain; SMART: Resolvase domain.
  
     0.532
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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