STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1239PFAM: Protein of unknown function DUF3320; KEGG: mvn:Mevan_0087 superfamily I DNA/RNA helicase. (2128 aa)    
Predicted Functional Partners:
Cpap_2927
PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: cce:Ccel_1964 fibronectin-binding A domain protein.
  
    0.903
Cpap_0201
PFAM: restriction endonuclease; KEGG: maq:Maqu_3383 restriction endonuclease.
  
    0.897
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
  0.828
Cpap_0740
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: cce:Ccel_2474 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
    
  0.813
Cpap_2286
PFAM: N-6 DNA methylase; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
  
  
 0.686
Cpap_3982
TIGRFAM: type I restriction-modification system, M subunit; KEGG: cpf:CPF_2599 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
  
  
 0.686
Cpap_4213
PFAM: N-6 DNA methylase; KEGG: nth:Nther_0795 N-6 DNA methylase.
  
  
 0.686
Cpap_1240
KEGG: wch:wcw_1894 hypothetical protein.
 
     0.654
Cpap_1238
SMART: helix-turn-helix domain protein; KEGG: dae:Dtox_3293 transcriptional regulator, XRE family.
       0.637
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
    0.557
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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