STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1243KEGG: cce:Ccel_0924 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074. (148 aa)    
Predicted Functional Partners:
Cpap_0191
Cysteine desulfurase; Manually curated; KEGG: clj:CLJU_c14540 cysteine desulfurase; PFAM: aminotransferase class V.
 
 
 0.744
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
 
 0.741
Cpap_3222
PFAM: aminotransferase class V; KEGG: cce:Ccel_1684 aminotransferase class V.
  
 
 0.699
Cpap_2970
KEGG: cce:Ccel_1931 FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein.
 
  
 0.685
Cpap_3912
KEGG: cce:Ccel_1144 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; DsrE family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.637
Cpap_0638
Manually curated; TIGRFAM: flagellar motor switch protein FliG; KEGG: cce:Ccel_2050 flagellar motor switch protein G; PFAM: flagellar motor switch protein FliG; MgtE intracellular region.
   
   0.574
Cpap_1994
KEGG: cce:Ccel_0322 NifU-like domain-containing protein.
  
  
 0.536
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
   
 
 0.517
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.483
Cpap_1245
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tjr:TherJR_2268 binding-protein-dependent transport systems inner membrane component.
       0.470
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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