STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1261KEGG: cce:Ccel_0828 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Cpap_1260
KEGG: cce:Ccel_2947 hypothetical protein.
       0.773
Cpap_1262
KEGG: cce:Ccel_0827 hypothetical protein.
       0.732
Cpap_1257
KEGG: cce:Ccel_0833 hypothetical protein.
       0.565
Cpap_1258
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cce:Ccel_0832 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin.
       0.565
Cpap_1259
KEGG: cpf:CPF_0971 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
       0.565
Cpap_1264
KEGG: cbe:Cbei_0917 hypothetical protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
       0.437
Cpap_1265
Hypothetical protein; Manually curated; KEGG: cbk:CLL_A2250 hypothetical protein.
       0.437
Cpap_1266
KEGG: cbt:CLH_2110 hypothetical protein.
       0.437
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.