STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1276KEGG: afl:Aflv_0660 phage terminase, small subunit. (126 aa)    
Predicted Functional Partners:
Cpap_1275
PFAM: Terminase; KEGG: afl:Aflv_0661 phage terminase, large subunit.
       0.773
Cpap_1267
KEGG: cbk:CLL_A2252 hypothetical protein.
       0.737
Cpap_1268
KEGG: afl:Aflv_0670 phage related protein.
       0.737
Cpap_1269
KEGG: bwe:BcerKBAB4_5843 prophage pi2 protein 37.
       0.737
Cpap_1270
TIGRFAM: phage head-tail adaptor; KEGG: bcz:BCZK3421 prophage pi2 protein 36.
       0.737
Cpap_1271
KEGG: afl:Aflv_0666 phage related protein.
       0.737
Cpap_1272
TIGRFAM: phage major capsid protein, HK97 family; KEGG: afl:Aflv_0664 phage major capsid protein.
       0.737
Cpap_1273
Phage prohead protease, HK97 family; KEGG: bbe:BBR47_53780 putative prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97.
       0.737
Cpap_1274
Phage portal protein, HK97 family; KEGG: lin:lin2578 hypothetical protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
       0.737
Cpap_1264
KEGG: cbe:Cbei_0917 hypothetical protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
       0.600
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.