STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1277SMART: HNH nuclease; KEGG: bbe:BBR47_53820 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Cpap_1275
PFAM: Terminase; KEGG: afl:Aflv_0661 phage terminase, large subunit.
 
  
 0.963
Cpap_1274
Phage portal protein, HK97 family; KEGG: lin:lin2578 hypothetical protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
  
 0.929
Cpap_1273
Phage prohead protease, HK97 family; KEGG: bbe:BBR47_53780 putative prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97.
 
     0.890
Cpap_1270
TIGRFAM: phage head-tail adaptor; KEGG: bcz:BCZK3421 prophage pi2 protein 36.
 
    0.877
Cpap_0177
PFAM: TRAG family protein; KEGG: cce:Ccel_2738 TraG family protein.
   
 
 0.871
Cpap_1272
TIGRFAM: phage major capsid protein, HK97 family; KEGG: afl:Aflv_0664 phage major capsid protein.
 
   
 0.866
Cpap_1268
KEGG: afl:Aflv_0670 phage related protein.
 
     0.825
Cpap_1703
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.784
Cpap_1269
KEGG: bwe:BcerKBAB4_5843 prophage pi2 protein 37.
 
     0.779
Cpap_3478
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 methionine synthase (B12-dependent).
    
  0.776
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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