STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1297PFAM: protein of unknown function DUF955; KEGG: drm:Dred_0494 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Cpap_0868
PFAM: Two component regulator three Y domain-containing protein; KEGG: cce:Ccel_2632 hypothetical protein.
  
     0.691
Cpap_0575
PFAM: Two component regulator three Y domain-containing protein; KEGG: cce:Ccel_2632 hypothetical protein.
  
     0.676
Cpap_0952
KEGG: slp:Slip_1811 fibronectin type III domain protein; PFAM: Kelch repeat type 1-containing protein; Fibronectin type III domain protein; SMART: Kelch repeat type 1-containing protein; Fibronectin type III domain protein.
  
     0.587
Cpap_2310
Regulatory protein MarR; KEGG: cpy:Cphy_1696 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
    0.581
Cpap_2110
KEGG: cce:Ccel_0029 hypothetical protein.
  
     0.555
Cpap_3337
Transcriptional regulator, LuxR family; KEGG: tex:Teth514_0348 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
    0.541
Cpap_4192
Helix-turn-helix domain protein; KEGG: cce:Ccel_2256 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
  
 0.530
Cpap_1296
Cold-shock protein DNA-binding; KEGG: tet:TTHERM_00518520 TPR Domain containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; Tetratricopeptide repeat.
       0.515
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
     0.503
Cpap_4193
Helix-turn-helix domain protein; KEGG: cce:Ccel_2256 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
  
 0.500
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.