STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1322Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. (150 aa)    
Predicted Functional Partners:
Cpap_1323
PFAM: peptidase M22 glycoprotease; KEGG: cce:Ccel_0800 peptidase M22 glycoprotease.
 
 
 0.994
Cpap_1324
PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: cce:Ccel_0799 protein of unknown function UPF0079.
  
  
 0.914
Cpap_1325
PFAM: amidohydrolase; KEGG: cce:Ccel_0798 amidohydrolase.
       0.837
Cpap_1321
KEGG: cce:Ccel_0802 peptidase S16, lon-like protein.
       0.672
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
  
 0.613
Cpap_1318
Hypothetical protein; Manually curated; KEGG: cce:Ccel_0805 hypothetical protein.
       0.533
Cpap_1326
Iron (metal) dependent repressor, DtxR family; KEGG: cce:Ccel_0797 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor.
       0.485
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
 
   
 0.476
Cpap_1320
KEGG: cce:Ccel_0803 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
    0.434
Cpap_1319
KEGG: cce:Ccel_0804 hypothetical protein.
       0.432
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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