STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1374PFAM: NLPA lipoprotein; KEGG: dze:Dd1591_2399 NlpA lipoprotein; Belongs to the nlpA lipoprotein family. (293 aa)    
Predicted Functional Partners:
Cpap_1372
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_0974 binding-protein-dependent transport systems inner membrane component.
 0.998
metN-2
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.998
Cpap_1245
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tjr:TherJR_2268 binding-protein-dependent transport systems inner membrane component.
 0.995
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.994
Cpap_1378
KEGG: cth:Cthe_2794 pyruvate ferredoxin oxidoreductase, gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
   
   0.725
Cpap_1375
PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: cth:Cthe_2797 thiamine pyrophosphate enzyme-like TPP-binding.
       0.705
Cpap_1376
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain-containing protein; KEGG: cth:Cthe_2796 pyruvate ferredoxin oxidoreductase, alpha subunit.
       0.705
Cpap_1377
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; KEGG: cth:Cthe_2795 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit.
       0.705
Cpap_0740
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: cce:Ccel_2474 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
  
  
 0.649
Cpap_1379
PFAM: aminotransferase class I and II; KEGG: cth:Cthe_2793 aminotransferase.
  
    0.613
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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