STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1400PFAM: aminoglycoside phosphotransferase; KEGG: btk:BT9727_1911 aminoglycoside phophotransferase family protein. (307 aa)    
Predicted Functional Partners:
Cpap_1401
KEGG: cce:Ccel_3444 hypothetical protein.
       0.734
Cpap_1402
KEGG: cce:Ccel_3445 TPR repeat-containing protein.
       0.734
Cpap_1403
KEGG: cce:Ccel_3446 TPR repeat-containing protein.
       0.734
Cpap_2356
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_3397 S-layer domain protein.
  
     0.719
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
  
     0.633
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
     0.625
Cpap_1404
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cce:Ccel_3447 peptidase S8/S53 subtilisin kexin sedolisin.
 
     0.610
Cpap_2607
KEGG: cce:Ccel_2502 hypothetical protein.
  
     0.609
Cpap_0758
KEGG: cce:Ccel_2464 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
  
     0.600
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
  
 0.598
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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