STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_1404PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cce:Ccel_3447 peptidase S8/S53 subtilisin kexin sedolisin. (400 aa)    
Predicted Functional Partners:
Cpap_2327
KEGG: cce:Ccel_3421 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
  
 0.662
Cpap_1422
KEGG: amd:AMED_7297 rhs family protein.
  
 0.656
Cpap_1406
Transketolase central region; KEGG: cce:Ccel_3449 transketolase domain protein; PFAM: Transketolase central region; Transketolase domain-containing protein; SMART: Transketolase central region.
 
     0.620
Cpap_1400
PFAM: aminoglycoside phosphotransferase; KEGG: btk:BT9727_1911 aminoglycoside phophotransferase family protein.
 
     0.610
Cpap_1405
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cce:Ccel_3448 NAD-dependent epimerase/dehydratase.
       0.592
Cpap_3732
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain-containing protein; KEGG: cce:Ccel_2643 peptidase S8/S53 subtilisin kexin sedolisin.
  
     0.591
Cpap_1407
Pyruvate dehydrogenase (acetyl-transferring); KEGG: cce:Ccel_3450 dehydrogenase E1 component; PFAM: dehydrogenase E1 component.
 
     0.565
Cpap_0952
KEGG: slp:Slip_1811 fibronectin type III domain protein; PFAM: Kelch repeat type 1-containing protein; Fibronectin type III domain protein; SMART: Kelch repeat type 1-containing protein; Fibronectin type III domain protein.
  
  0.526
Cpap_3533
PFAM: S-layer domain-containing protein; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1376 S-layer domain protein.
  
  0.513
Cpap_1401
KEGG: cce:Ccel_3444 hypothetical protein.
       0.504
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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